rs49693426 SNP Detail

Summary

• ID
  rs49693426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34484831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATCCAATTCT CAACAAGGCC TCTGGGATCC TCCCATGGCT
  TTGCGTGTGG TGTGTGTGTG TGTATAAATT TCAAAATGCA AGTAAAATCA TGTGATCTAT
  R
  TTTTTTGTTT GTTTTGAGAC AGGGCTTGTG TAGCCCTGGC TATCTAGCTG TCCTGGAACT
  CACTCTGTAG ACCTAGCTAG TTCTGAGCTC AGAGATCGGC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148888920	ENSMUSSNP972799	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49693426					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34484831 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	43 bp upstream
Gm28306	predicted gene 28306	1020 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Tssr6216	transcription start site region 6216	1864 bp downstream
Tssr6217	transcription start site region 6217	846 bp downstream
Tssr6218	transcription start site region 6218	1281 bp upstream