rs49693836 SNP Detail

Summary

• ID
  rs49693836
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129914450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT GATATTAGGA ATGCAGTCCA
  C
  TGCCTTCATT TTACCCAGTT AGAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss144477310	ENSMUSSNP3596095	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321692398	CHEV_5_130361480	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49693836					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129914450 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	1358 bp proximal
Rr399383	regulatory region 399383	1599 bp upstream
Tssr53498	transcription start site region 53498	1530 bp downstream
Tssr53499	transcription start site region 53499	1679 bp downstream
Tssr53500	transcription start site region 53500	1807 bp downstream
Tssr53501	transcription start site region 53501	1833 bp downstream