rs49695180 SNP Detail

Summary

• ID
  rs49695180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43861436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ACTATGGGAG AATAGAAATG AAACTTTAAA ATAATTCTAC
  CTTTCTTTAA AAGACAGGCT TATGATTTAT TCGGTTTTCC CTCTTTCTAA TCCATTTATT
  Y
  ATTTGTGTAT TCATTGAGTA ATTGCTGCTT TTTATCATGT CCACACGGGA TACAAGAGAG
  TAGAAAAACT GTAGGTCATT GTTCTTTACA GGCCTAATGA A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147020882	ENSMUSSNP532247	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49695180					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43861436 () rs orientation: forward

Symbol	Name	Function Class
Rr345822	regulatory region 345822	836 bp distal
Rr356243	regulatory region 356243	968 bp distal
Spink1	serine peptidase inhibitor, Kazal type 1	within coordinates