rs49695405 SNP Detail

Summary

• ID
  rs49695405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59699357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGGTGGC TCACAACCAT
  CTGTAACGGG ATCCGATGCC CTCTTCTGGT GCTGACTGAA GACAGCTACA GTGTATAAAT
  AAATAAATAA ATCTTTAAAA AAGAAAAAAA GGGGGTTTGT CCAACAAGAG TTTCGAATCT
  TCTGGTTACT CATTCCTCAG CCCAGGCAGC CCCTGGAAGA CTGTAATGGA ACCTACATGA
  Y
  ACTCCATTCT GCAGCCACCG AGAAACCTAC TACCTGAGTT TCTAATCCTT CCCAGCCCGT
  AACACCAACT GTCACTTATC CTCTGGAAAT CCTCCTGGGC ACTGGGCAAC AGGCTTCTCT
  GACGGGATTG CATATGGCGT CTGAATTCCG GTGAGGAAGG AGCCTAGGTC TTCTGTTACT
  CTCCCAATCC CAATGTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132241352	ENSMUSSNP3673359	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49695405					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59699357 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2968	CpG island 2968	1005 bp proximal
Flcn	folliculin	within coordinates
Gm16062	predicted gene 16062	1549 bp upstream
Rr448261	regulatory region 448261	147 bp distal
Rr448262	regulatory region 448262	within coordinates
Rr448263	regulatory region 448263	1047 bp proximal
Rr448264	regulatory region 448264	1331 bp proximal
Rr448265	regulatory region 448265	1475 bp proximal
Tssr101863	transcription start site region 101863	1576 bp upstream
Tssr101864	transcription start site region 101864	1756 bp upstream
Tssr101865	transcription start site region 101865	1778 bp upstream
Tssr108246	transcription start site region 108246	1243 bp downstream
Tssr108247	transcription start site region 108247	1495 bp downstream