rs49696218 SNP Detail

Summary

• ID
  rs49696218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87194437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGTCCG CTGCCCCGTC
  AAGGGGTCAT AAGAAGGCGT CTCGAGGTGC CATGGGATTT GTAGTTCCCT CCGTTTGCCG
  CGGAGCGCCG GGCCCCGGGC TCTGGGCGGG GCGGAAAGTG TGGTGGCCGC CCGGGCAGCT
  AAGAGGCGGC CTGAGGCGTA GAGCATTGCG GGAGGCGGAG GGAAACCAAG GACTGACAAA
  Y
  TCGAGTCGGC TCATGAACTA CAACTCCCAG CAGCTCAGGG GGCGGGGGCG GGGCCAGCCC
  GAAGGAGGGA GGCCATCTAG TCCAACCTTC GCTCTCTGGA CCCCGCTAGG CCTCAGTCAT
  CTTCTAGTCC CGAGAGCTGA CTTTCTTGGC CGGCCGACCG GGCGAGATGC AAGCCGGGAA
  GGTCTGTGCC CCACGTCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451851	NES15431693	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49696218					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451851	NES15431693	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87194437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	within coordinates
Gm6566	predicted gene 6566	1812 bp downstream
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	within coordinates
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	383 bp downstream
Rr403430	regulatory region 403430	within coordinates
Rr470321	regulatory region 470321	488 bp distal
Rr470322	regulatory region 470322	539 bp distal
Rr470323	regulatory region 470323	within coordinates
Rr470324	regulatory region 470324	157 bp distal
Rr470325	regulatory region 470325	229 bp proximal
Tssr114506	transcription start site region 114506	462 bp downstream
Tssr114507	transcription start site region 114507	40 bp upstream
Tssr114508	transcription start site region 114508	122 bp upstream
Tssr114509	transcription start site region 114509	307 bp upstream
Tssr117156	transcription start site region 117156	187 bp upstream
Tssr117157	transcription start site region 117157	168 bp upstream
Tssr117158	transcription start site region 117158	220 bp downstream