rs49696320 SNP Detail

Summary

• ID
  rs49696320
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177809180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATGGTTG TGACTCCATT
  TCATTTATGC AAATGCCTAC TCAACATCTC ATGAGCCTCT AAAAGGCACT GAAAATATAA
  CATGACCTAA CAGTAATTTC ATTTCCCTTT CTAACCTGTT TCTTCCTCAA ATGTTTGATA
  TATTATGAAT AGCATACTAT CTACCCAAAT GTGTGAAAAA TCTAGGACCT ATTTTTGAGA
  G
  TGTACCCAAC AGAAAGAAAC TCAAGCAATT TTTATTTTTT TAAAGAGTTA TTTACTTTAT
  TTATCTGAGT ACATTGTAGC TGTCTTCAGA CATACCAGAA GAGGGCATCT GATCCCAAAT
  ATAGATGGTT GTTACCCACC ATGTGGTTGC TGGGACTTGA ACTCAGGACC TCTGGAAGAG
  CAGCCAGTGC TCTTAACCAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146351713	ENSMUSSNP2309989	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49696320					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177809180 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	1809 bp upstream
Cpgi1085	CpG island 1085	1474 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr14372	regulatory region 14372	1380 bp distal
Rr25806	regulatory region 25806	within coordinates
Rr29061	regulatory region 29061	1220 bp proximal
Rr396636	regulatory region 396636	1430 bp upstream
Tssr10371	transcription start site region 10371	1813 bp upstream
Tssr10372	transcription start site region 10372	1852 bp upstream