rs49697023 SNP Detail

Summary

• ID
  rs49697023
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77041020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGATCC CACCATGTAT
  ATCCAAGTGG AAGAACCCGA AGGGTTATAA AATTCCACTG GATAAATGGC TGGCTTCTGA
  TGAAAGGCTT CACATGAGTC ATATAAGTGA AAAATTTGAC AAACTGGCTG AAGTGCTTTC
  CAGAGCAGCT GTGAGCCCAC ATCAGTTTAC CTCAGTTCCA GAGGGAAACT GACGTGTGTG
  K
  GTATGATAAT AGCAGAAGAG GTTAGTGCAG CTAAGGAGGT TTGACGAGCT GAAGGAGTTG
  AAGCTGAGTA AGGAATTCCA GGACTTAGAG GAAGTGATGG AGAAGAGTAT CAGAGAAGCC
  CTGGGCCATC AGGAGAGGCT GAAAGCTGAG CATCGACACA GAGCCAAGAT TCTCAAGCTA
  ACGCTTCCAG AGGCAGAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss144722374	ENSMUSSNP620320	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49697023					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77041020 () rs orientation: forward

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	1487 bp upstream
Tssr7562	transcription start site region 7562	1483 bp upstream