rs49697178 SNP Detail

Summary

• ID
  rs49697178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:179785772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCGACAACT GATTTCTAAT TGTTTAAAAA AATTCATTTT
  ACCTCTTTTA TACGTGCATG CACATATCCC TGCGTGATTG TGGCGATCAG AGGGCAAGGC
  R
  TGAGAATTGA TTTCTCTACT TCTATCATGT TGGGCCTAGG GATGGAACTC GGGCTGTCTG
  GCTTGGCAGC AGGGGTTTTT CTTGCTGAAC CATCTGGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146372695	ENSMUSSNP3618094	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49697178					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:179785772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1100	CpG island 1100	919 bp proximal
Rr20822	regulatory region 20822	772 bp distal
Rr29078	regulatory region 29078	628 bp proximal
Tssr10433	transcription start site region 10433	1765 bp upstream
Tssr10434	transcription start site region 10434	1777 bp upstream