rs49697869 SNP Detail

Summary

• ID
  rs49697869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75564416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCGTTGC TTTGCAAATA TCCTTGCAGT CATTAAATGC
  AATGCCAGCC CGATGCTGTT GGCAGTAAAT TATTTCACGG GCTCGTCAGG AATGAAGTTT
  R
  TCCAGGACCG CATGGTTTAT CCAAGATATT TTCAAATCTA ATATTAACAT TCACATATGC
  TATTACCAAC TAATATGGAA AGATACATTC TACTTTTCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60495633	NES16525096	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	A	A	G	G		A	G	G	A		G
ss148372333	ENSMUSSNP693066	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss325251676	CHEV_16_75767773	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49697869					SNP	G	A	G	G	G	G	A	A	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60495633	NES16525096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75564416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	519 bp distal
Hspa13	heat shock protein 70 family, member 13	within coordinates
Rr325470	regulatory region 325470	within coordinates
Rr404916	regulatory region 404916	213 bp downstream
Rr404917	regulatory region 404917	384 bp upstream
Tssr141799	transcription start site region 141799	731 bp upstream
Tssr141800	transcription start site region 141800	453 bp upstream