rs49698858 SNP Detail

Summary

• ID
  rs49698858
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34576249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGTTTTG TTAGGAATTA GTTAGGGATC TGCTGTGCAA
  GTTCGAAACC CGTAGATCAA GCTGGGACTT TTTCATTTGG AAGGCCAAGC TGCTACCCAC
  C
  GGTGGAATTT CTTCTTTTCA GGGGGGAAGT TTCAGTGTTG CTCTGAACCC TTTAAACTGA
  TTGAATCTGG CCCACTCCTG GTTATCCGGG ACAATCTGT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149092972	ENSMUSSNP1428669	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322575056	CHEV_8_35172149	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49698858					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34576249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	240 bp distal
Dctn6	dynactin 6	383 bp upstream
Erhrt-ps	ERH mRNA splicing and mitosis factor retrotransposed, pseudogene	1907 bp downstream
Rr400814	regulatory region 400814	448 bp downstream
Tssr80889	transcription start site region 80889	1306 bp upstream
Tssr80890	transcription start site region 80890	1253 bp upstream
Tssr80891	transcription start site region 80891	607 bp upstream
Tssr80892	transcription start site region 80892	573 bp upstream
Tssr80893	transcription start site region 80893	286 bp upstream