rs49699340 SNP Detail

Summary

• ID
  rs49699340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32751374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGTGAA GGAGCCTGCC
  GTTACCAAAT TGTTAGTCCC CCCGGGGGAG AATAGGATCA CTACCACACT TTAGAGACAA
  AATGGAAGGA AGCTTGATTT TATTGGGGTG CACCCAGGAG CTGGCCAGCG GCGACTATCT
  CTTATATCAG GTTAAAGAGA GCAGGGCATA GTCTATTTCT TGGACCCCTT CTAAGGAGTA
  R
  AATCACAATT GGTTTCAAAT CAGGTTTACA GAAGAGAGAC AATAAAGAAA AAGGAAATAT
  AGAAAAAAAA TCTCAAAAAA AATCACCATG TGGTCATCAT GTGATTAGGG AAGGCTAAGG
  GGGGCTAGAA TATCCTCAAA AATAAGTCAA GATCATGGCT CGAGGAAACA GACTTTAAAA
  ACAGCAACTC GGCTCTTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60384460	NES15878156	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49699340					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60384460	NES15878156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32751374 () rs orientation: forward

Symbol	Name	Function Class
Rr575011	regulatory region 575011	1978 bp distal
Rr575012	regulatory region 575012	820 bp proximal
Rr575013	regulatory region 575013	1035 bp proximal
Rr575014	regulatory region 575014	1171 bp proximal