rs49700031 SNP Detail

Summary

• ID
  rs49700031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123301012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCTAAA TAAGGCCTAT
  CATACTCTTG AGTGTGAGTC TCAGTACCTC AAATCCCAGA CACAAAAGCC TCTAAGGTCA
  CAAGTATCCC CTCAGCACCT GTCACAACAC ACCCCCTAGC TGGTGTTACA TACTTGGCTT
  CTGGAGATTT GAAGTTGAAT GGCACACACT AGAAGGCTTG GAGAGCAGCA AGCAAAAGAT
  R
  CTTTTCATTA AGGGCAACCG TCTGTGGCTT ATTAATCACT CATGTTCCAA GCCAACATTT
  ATCTTGCACC TTTGTAACAA TCAAACCTAT CTTCTTTGGA AGCCTAGTTA ACCCAGTTAT
  TTCCTGCGCA AATGTCTCCT GTATCGTTAA CTCTTAATTC ACACAACCTC CAGAAACAGG
  ACACAGTCTT ATTACACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135766558	ENSMUSSNP686864	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320920391	CHEV_3_123210281	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49700031					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123301012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	575 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	766 bp downstream
Rr397991	regulatory region 397991	329 bp downstream
Rr584523	regulatory region 584523	444 bp distal
Rr584524	regulatory region 584524	309 bp distal
Rr584525	regulatory region 584525	1011 bp proximal
Rr584526	regulatory region 584526	1556 bp proximal
Rr584527	regulatory region 584527	1947 bp proximal
Snhg8	small nucleolar RNA host gene 8	189 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	574 bp downstream
Tssr31551	transcription start site region 31551	1187 bp upstream
Tssr31552	transcription start site region 31552	1225 bp upstream
Tssr35502	transcription start site region 35502	967 bp downstream
Tssr35503	transcription start site region 35503	1552 bp downstream