rs49700442 SNP Detail

Summary

• ID
  rs49700442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46042169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTGTTT GTTGAGTATC
  ATCTCTTCTC ATCTCATCTG TGTGTGGAGC TATGTGGCAG AGAGGAGCGG GTCACCTCTT
  TGTGCCTTGC ATTCCCCTTT GTGATACCGA CGAGAGGGAG AGGTAAGCAT GGGGGGAGGG
  ATAACTATTT CTGCTTCTGT CTGGGGTGGG GGCTATAACA GCAGGGACAG GAGTGCAGAA
  R
  CTTCTAGATC ATGCCCCTAT CCAAAGCAGC TGGTGTTTTG GAGCCAGGCA GAGCGGCTCT
  GCAGAAGCTG ACCTGATTTG CCTAAGGGCC CCGCAGTTAC AGAAATGACC ACTAGGTGTC
  AGCCTCAGCT CATACTTGAA GTGAGGCTAG GCCTCCAGGT TGCAAACCCC CCTCTGGAGA
  GTTGGTTGCC CCACAGTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259553	NES15752997	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49700442					SNP	G	G	G	G	G	G	A	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259553	NES15752997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46042169 () rs orientation: forward

Symbol	Name	Function Class
1600014C23Rik	RIKEN cDNA 1600014C23 gene	1621 bp downstream
BE949265	cDNA sequence BE949265	within coordinates
Rr331489	regulatory region 331489	within coordinates