rs49700771 SNP Detail

Summary

• ID
  rs49700771
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53870004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAGAGTTT GGAACACACG TTTCTTTAAC TTTAAAAAGT
  TCTGCAAAGA GTCTTTCCTT TCTGAACAGA GGCTAAAACC TGTGGTCTCT TCTCTGGAGC
  M
  AGTCTGAATC CGGCCCCTCT GAATCACATC ACTACCTCGA GAAAGTCCCA CCACTCAGGG
  TCTCAGGGCA TCTCCTAGGG GCAGAACCTT CTGGACTCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132135337	ENSMUSSNP1707850	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49700771					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53870004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	243 bp proximal
Gm30927	predicted gene, 30927	853 bp upstream
Rr447212	regulatory region 447212	1296 bp distal
Rr447213	regulatory region 447213	69 bp proximal
Rr447214	regulatory region 447214	742 bp proximal
Rr447215	regulatory region 447215	1144 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	847 bp upstream
Tssr101465	transcription start site region 101465	866 bp upstream
Tssr107965	transcription start site region 107965	709 bp downstream
Tssr107966	transcription start site region 107966	771 bp downstream
Tssr107967	transcription start site region 107967	1093 bp downstream
Tssr107968	transcription start site region 107968	1118 bp downstream
Tssr107969	transcription start site region 107969	1176 bp downstream