rs49702130 SNP Detail

Summary

• ID
  rs49702130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:75988912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATG ATCTGATGGA TTCTTGCCTT
  R
  GAGATCCATC CTCAGTGACG CAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss52665260	NES15473326	PERLEGEN	MM_PANEL2	f	SNP	A	A	G			G	A	A	G
ss144639125	ENSMUSSNP6923587	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss324437233	CHEV_13_75978241	CHEVERUD	SCREENING_POP	f	SNP					A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs49702130					SNP	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665260	NES15473326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:75988912 () rs orientation: forward

Symbol	Name	Function Class
Glrx	glutaredoxin	within coordinates
Rr482793	regulatory region 482793	873 bp distal
Rr482794	regulatory region 482794	1176 bp proximal
Tssr120401	transcription start site region 120401	912 bp downstream
Tssr120402	transcription start site region 120402	865 bp downstream
Tssr120403	transcription start site region 120403	749 bp downstream
Tssr120404	transcription start site region 120404	708 bp downstream