rs49702505 SNP Detail

Summary

• ID
  rs49702505
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129915422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTTGCTA GCCTTGAACT
  GGTTGCAACC CCCGCTTGCC TTCCGGGAGA AGGAGGCACA AGGGACTATC TTGATGACAG
  ATGACGCATG CGCTACAACA TGCACTCCCG AGGTTCACTC CCAGTATGAG CACAATTTTA
  GTTTTCTACG ATTTTATTAC CCCAAGGAGG GACCTCAGAA TCTGGACTGG GGGGAGGGGT
  A
  TCAACAATTT CCTATTTGTT TTTTAGGTCG GCCGGCAAGG TAGCTCAATA GATCGTTTAC
  CACAAAATGG TAGACATCTT GGACCCAAGT GATGGAAAGA CATAGCTTTA AATTTTCGGC
  CCTCTACACA CAGCCCGCAA TTTTCTTTGT TTCTTTTTCC TTAAAAAAAT AAATAAATAA
  AAGAAAAGAA AATCTTTAAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321692404	CHEV_5_130362451	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49702505					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129915422 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	386 bp proximal
Rr399383	regulatory region 399383	627 bp upstream
Tssr53498	transcription start site region 53498	558 bp downstream
Tssr53499	transcription start site region 53499	707 bp downstream
Tssr53500	transcription start site region 53500	835 bp downstream
Tssr53501	transcription start site region 53501	861 bp downstream