rs49702706 SNP Detail

Summary

• ID
  rs49702706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44387235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCAGA AAAACAACAA
  CAAAAAAGAA AAAAAAAAAA AAGAAAAAAC AACCCCACAG TTGGGTGTGG TGGCGCATGC
  CCATAACTGC ACCCCTTTAA ATGCTGAGGT AGAAGCCTGG GGCCAGCCTG GGCTATATAG
  TGAATACCAG CTCAGTCAGG CCTGCATAAT AACAAGGCCT CTTCCCCCCA AACAACAGAC
  R
  AAACCAACCA ACAGCCAAGT CAACCCAAGT CCATTCCTGA ATTGTTTTCT TCAGGGTGAT
  GACGCACTTA TGGACCTGTA AGGATGGCTC AGTGGCTTTA GAGTAGTGGC GACTCTTCCA
  GAGGCCATGG GTGTATTTCC TAGCACCCAG GTGGAAGCTT ACAATGCCTG TAACTCCAGT
  TCCAGGAGAT CTGATGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136396099	ENSMUSSNP5898090	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49702706					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44387235 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Gm10023	predicted gene 10023	1986 bp downstream
Gm22540	predicted gene, 22540	473 bp downstream
Gm47204	predicted gene, 47204	774 bp downstream
Rr195028	regulatory region 195028	within coordinates
Rr203857	regulatory region 203857	5 bp proximal
Rr206312	regulatory region 206312	1565 bp proximal
Rr209142	regulatory region 209142	1035 bp distal
Rr209143	regulatory region 209143	366 bp proximal