rs49702812 SNP Detail

Summary

• ID
  rs49702812
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTGGTT CAGAAAATCA
  TCCAAAAGAT ACTGAACAAG TGAGTCGCGA TTTGTGCTTA CACCTGACTG GCACCCGATT
  TCTGAAAATT ATAGCAGGGA AAATCAAGGT TAACTTCAGT TCAGGAACCT GAATTATTAT
  TTTCATTGTT AACTTTGTCC TGTGAGCATC AGTTTGAATT GATAGAAGGG TACGACTAGC
  W
  CCTTTCATCT ACACACGTAA AAGTCCTTCC TTAATGGATG GTCGCTGTGT GTCCCTAAGA
  ATTAAGTAGA TAGAACCAAC TAGCGCTGGT GTAAAGCCTG TTATCTATTA AGATTCAATA
  CTTTACCCCT GCCCTTTCCA TGTCTGTGGG CTGTAAAGTC TAACTCTTGG TTTTGGTCAA
  GGTGAGCCTC TAAGGCTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198261	NES16702731	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49702812					SNP	A	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198261	NES16702731	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052461 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1398 bp upstream
Rr614420	regulatory region 614420	1409 bp distal
Rr614421	regulatory region 614421	1540 bp distal
Rr614422	regulatory region 614422	719 bp distal
Tssr47224	transcription start site region 47224	893 bp downstream
Tssr47225	transcription start site region 47225	791 bp downstream
Tssr47226	transcription start site region 47226	722 bp downstream
Tssr47227	transcription start site region 47227	528 bp downstream
Tssr47228	transcription start site region 47228	465 bp downstream
Tssr47229	transcription start site region 47229	444 bp downstream
Tssr47230	transcription start site region 47230	419 bp downstream
Tssr47231	transcription start site region 47231	389 bp downstream
Tssr47232	transcription start site region 47232	242 bp downstream
Tssr47233	transcription start site region 47233	192 bp downstream
Tssr47234	transcription start site region 47234	157 bp downstream
Tssr47235	transcription start site region 47235	586 bp upstream
Tssr47236	transcription start site region 47236	606 bp upstream
Tssr47237	transcription start site region 47237	655 bp upstream
Tssr47238	transcription start site region 47238	661 bp upstream
Tssr47239	transcription start site region 47239	721 bp upstream
Tssr47240	transcription start site region 47240	733 bp upstream
Tssr47241	transcription start site region 47241	748 bp upstream
Tssr47242	transcription start site region 47242	785 bp upstream
Tssr47243	transcription start site region 47243	808 bp upstream
Tssr47244	transcription start site region 47244	842 bp upstream
Tssr47245	transcription start site region 47245	862 bp upstream
Tssr47246	transcription start site region 47246	913 bp upstream
Tssr47247	transcription start site region 47247	957 bp upstream
Tssr47248	transcription start site region 47248	1020 bp upstream
Tssr47249	transcription start site region 47249	1090 bp upstream
Tssr47250	transcription start site region 47250	1228 bp upstream
Tssr47251	transcription start site region 47251	1292 bp upstream
Tssr47252	transcription start site region 47252	1344 bp upstream
Tssr51810	transcription start site region 51810	1459 bp upstream
Tssr51811	transcription start site region 51811	1405 bp upstream
Tssr51812	transcription start site region 51812	375 bp upstream
Tssr51813	transcription start site region 51813	358 bp upstream
Tssr51814	transcription start site region 51814	605 bp downstream
Tssr51815	transcription start site region 51815	639 bp downstream
Tssr51816	transcription start site region 51816	673 bp downstream