rs49703230 SNP Detail

Summary

• ID
  rs49703230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10991924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCAAACT GGTCCACTGC
  AATGGCTCTC CAGTTAGGAA GAGTCAAGAA TCGGGCAACA AATGGAGAAC CCCATTAGCA
  TTCCCCAGAT ACTCCTTCAT TGCGCATGAG GCAATGGTTT CCCTCTCTTG CATTTTTACA
  ACAAAACAAA CAAAATAAGG AATAAGACAC AGCATCTTTC ACTATTCTAT ATTTTACTAG
  Y
  ACAACCAAAG CTATGTGTTG CCCACAACAT CGTATAGACT CAGTACAGCC ACGGAGGCTT
  CCTCTAAGAC AAAAGGGGAC ACTTTCAGGG TAGAGTCTCT GGCTGATCAC TTGAGCAGGG
  AAAAAAAAAG TGATTTCTAA GTTACTGATC TTAGAAGGGG TCACTTTTCT GGGCATATTT
  CCCACAACAA AGTCCAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61741556	NES17678357	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	C	C	C	T		T	T	C	T		C
ss324260888	CHEV_13_10941134	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49703230					SNP	C	C	T	C	T	C	C	C	C	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61741556	NES17678357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10991924 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	77 bp proximal
Rr278201	regulatory region 278201	152 bp proximal