rs49705076 SNP Detail

Summary

• ID
  rs49705076
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46383161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGAGGG ACCCAGAAAG
  TAGGAAGATT CTAACCAGTG TGGGAGGGAC CAAACCTTTG AGTGAAACTC AGAAATTAAG
  ACAAATGTCC CTCCTCATAA AAGCAATACT TAAGTTCTTT CTATTTGTCT TTATCGATGC
  ATGTGTGGAG CGGTGCTTAG CAAAGGATTG CCATTTAGAT AAGGCGATGA AGTTGTGGGG
  M
  ACCATTGCTG TATGACCTTG GTCACCTCCA CCTTCCGTGT TCGTACTGTG AAAAGAGGGG
  CAAACTTCCT CCTTAACCAT TCACTTTTTG GGAGGCTTCG ACTTGCATGT TGGTGCAAAG
  CGTCCTGGAA ACGCTAGCGC ACCTGACAAC CACTGTGTCT GATAATCCCC CTGCCTCTCA
  CCTGGGCACT GCAAACATCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60313001	NES15818206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49705076					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60313001	NES15818206	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46383161 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	within coordinates
Cpgi11001	CpG island 11001	105 bp proximal
Cpgi11002	CpG island 11002	1968 bp proximal
Gm59146	predicted gene, 59146	371 bp upstream
Rr405999	regulatory region 405999	317 bp upstream
Rr406000	regulatory region 406000	961 bp upstream
Rr406001	regulatory region 406001	1904 bp upstream
Rr548727	regulatory region 548727	within coordinates
Rr548728	regulatory region 548728	382 bp proximal
Rr548729	regulatory region 548729	1006 bp proximal
Rr548730	regulatory region 548730	1684 bp proximal
Tssr156751	transcription start site region 156751	631 bp upstream
Tssr156752	transcription start site region 156752	652 bp upstream
Tssr159650	transcription start site region 159650	1000 bp downstream