rs49705304 SNP Detail

Summary

• ID
  rs49705304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77157398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACAAAG AAGAGGAGCC
  TTGGGGTGCA GGGTTTTTTT TCAGTTTATT TAAAGGAAAT ATTGAGTCAG AGTCCTGAAT
  GAATTCTTTC TTTTAAGTTC CCAGTGTGAT GCCTGCAGGT CAGAGTTGAG GCTGTGGGCA
  GGCAGGTGGG AGGGGAACTC CTAGTCTGAA ATGTGTGAAA TGCATTACTA ACAGAGGGTA
  R
  GCAGTATTCA TAATAACTAG TGCCATGACA CTGAATACAT CTTTATAGAA ATCTGAAATG
  AGAATATTAA AAATTATGAA ATTAGTTCAT GAAAGAGACA ATTACAGAAA TTATACTGTA
  CTGATCCCCC CTCCATCTCT CTCCTATCTT AGATCTTCAG GAATGTAACT GGGATAATTG
  TCCAAATTGA ATCCCATACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss148392285	ENSMUSSNP6016929	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49705304					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77157398 () rs orientation: forward

Symbol	Name	Function Class
D16Mit217	DNA Segment, Chr 16 Massachusetts Institute of Technology 217	698 bp proximal
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Tssr139060	transcription start site region 139060	1008 bp upstream
Tssr139061	transcription start site region 139061	1931 bp upstream