rs49705421 SNP Detail

Summary

• ID
  rs49705421
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191709842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTTGGAA GGCCACCTGG GATCCGGAAA GTAAGCTGGA
  CCCAGGACCC AGGCGGCCAT GGGAGGCCCC TCAATCCTCA CTGGTCAAAG ATGAGCAGAC
  W
  CGGGCCTGAT CCTGAGGGTG CACAACCTGG TTTGTAAACT TAGAGGAAGC CACATCTGTT
  GTCTACTTTG GGCAGAGCAA GCTTCTGAGA GAAACCAGCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60361408	NES15865154	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	A	T	A	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49705421					SNP	A	T	T	T	T	T	A	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60361408	NES15865154	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191709842 () rs orientation: forward

Symbol	Name	Function Class
Gm70525	predicted gene, 70525	1540 bp downstream
Gm70534	predicted gene, 70534	within coordinates
Rd3	retinal degeneration 3	Intron
Rr426276	regulatory region 426276	498 bp distal
Rr426277	regulatory region 426277	316 bp distal
Rr426278	regulatory region 426278	1406 bp proximal
Tssr10797	transcription start site region 10797	492 bp downstream
Tssr10798	transcription start site region 10798	481 bp downstream
Tssr10799	transcription start site region 10799	436 bp downstream
Tssr10800	transcription start site region 10800	366 bp upstream
Tssr10801	transcription start site region 10801	403 bp upstream