rs49706754 SNP Detail

Summary

• ID
  rs49706754
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43872103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCTTGA ACTTTCTGTC
  TACCTGCCTT GGCCTCCTGA GTGCTGTGAT TGGTGACATG TCTCATCACA ACTAGCCAAC
  CATGTATTTT GAAAAAGCTT CCAAAATCAC AGAACATGAG AGGATTATAG CAAAAACCAC
  CTCCACACCC TGCCCAGTGA AGAAGGGCGC CAGGTCCTTT CTGTGGTCAT GTCTCTACTT
  K
  CCTGACAGCT TTGCTCACTG CAAAGCAAGT TATAGGCACA GTCTCCCTCA ACTTAAACAG
  GGAGCTTGGA ACCAGAAGGG CACAAACAAT CCTGGGCTGG TGATGGGGCC CAGCAACAAA
  CAGCGTGCTT ACTAACAAAA GGCCCTACGT TCAGTCTCCA TCAAAGAGGA AACTTCAGGC
  AGTTCAGAGA GGAAGAAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss52253973	NES15255737	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs49706754					SNP	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52253973	NES15255737	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43872103 () rs orientation: forward

Symbol	Name	Function Class
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
Rr384605	regulatory region 384605	within coordinates
Rr430903	regulatory region 430903	within coordinates
Tssr97483	transcription start site region 97483	230 bp downstream
Tssr97484	transcription start site region 97484	1208 bp downstream
Tssr97485	transcription start site region 97485	1236 bp downstream
Tssr97486	transcription start site region 97486	1257 bp downstream
Tssr97487	transcription start site region 97487	1272 bp downstream
Tssr97488	transcription start site region 97488	1320 bp downstream