rs49707417 SNP Detail

Summary

• ID
  rs49707417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31342787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC ATCGCTGCCC CGAGACTCCA
  R
  TCCTAACATG GCCTCTGTGT TCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146403539	ENSMUSSNP3823657	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320222239	CHEV_2_31308295	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49707417					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31342787 () rs orientation: forward

Symbol	Name	Function Class
Gm74859	predicted gene, 74859	within coordinates
Hmcn2	hemicentin 2	within coordinates
Rr554631	regulatory region 554631	946 bp distal
Tssr17185	transcription start site region 17185	1012 bp upstream
Tssr17186	transcription start site region 17186	1676 bp upstream
Tssr17187	transcription start site region 17187	1703 bp upstream
Tssr17188	transcription start site region 17188	1994 bp upstream