rs49708807 SNP Detail

Summary

• ID
  rs49708807
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113174540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACC CACACGTTAA AACATCTTCA
  M
  TAGAAGTATC TAGACAATTT GGGAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145257116	ENSMUSSNP1528196	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49708807					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113174540 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Gm10735	predicted gene 10735	1295 bp downstream
Mir449a	microRNA 449a	382 bp downstream
Mir449b	microRNA 449b	508 bp downstream
Mir449c	microRNA 449c	1915 bp downstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	382 bp distal
Rr486472	regulatory region 486472	1881 bp distal
Rr486473	regulatory region 486473	241 bp proximal
Tssr121166	transcription start site region 121166	392 bp downstream