rs49709595 SNP Detail

Summary

• ID
  rs49709595
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30841004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAGCTATC TCTCAACCAA GCAGATATTG AGGACGAATG
  CCAGGTGTGG TTCTTGCTGA CCCAGTACTA GGGCAGTGGA GCCAAGATTT GGAGTTTGAG
  K
  TCAGCCGGAG CTACACAGCC AGACCCCGTC TCAAAAACAA ACAGACAAAC AAACAAGGTC
  AAGGGTCTGG AGAGATCGCT CAGTTGTTAA GAGCGCCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148700712	ENSMUSSNP6734707	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss322139662	CHEV_7_31926598	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49709595					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30841004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18838	CpG island 18838	1108 bp proximal
Gramd1a	GRAM domain containing 1A	within coordinates
Rr645030	regulatory region 645030	1319 bp distal
Rr645031	regulatory region 645031	974 bp distal
Tssr71945	transcription start site region 71945	1048 bp downstream