rs49710851 SNP Detail

Summary

• ID
  rs49710851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44466514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGCAAGC TAGCTTAGGC
  TTCATAGAGG AGTTCCAGGC AGCAACCGCG AGATAACGCT TCCCAAGTAC TTGTAGAGCG
  CTGTATACGC GCACAGATAT ATCAGCTATG GAAAGTAGGC CACGAAGTCC TAACCACGAG
  ACTCTTCAAC ATATTTTTGT TTGTTTTGTT TTAACATTTA TTGTGGTGGT CAGAGGAGAG
  Y
  TAGCAGGAGT TGGTTCTCTG ACCATGTGAG TCCCAGGGAC GGAACTCGGG TCAAACTATT
  TGGCAGCCTT TACCCACTGC TCAGTCATTG TATTTTCTTT TAGAAAAAAA CCCTGACTTC
  ACCTCTTTTA CTCTCCCTAC CCCAGATTCT TAGCCATATG ATCGTTCTGT GTGTCCCACC
  TCCAAGGTTT CTGTTTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149123059	ENSMUSSNP8165	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49710851					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44466514 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	432 bp upstream
Cpgi18994	CpG island 18994	36 bp distal
Il4i1b	interleukin 4 induced 1B	within coordinates
Nup62	nucleoporin 62	within coordinates
Rr400297	regulatory region 400297	1017 bp downstream
Rr646219	regulatory region 646219	684 bp distal
Rr646220	regulatory region 646220	527 bp distal
Rr646221	regulatory region 646221	within coordinates
Rr646222	regulatory region 646222	1153 bp proximal
Rr646223	regulatory region 646223	1175 bp proximal
Tssr66426	transcription start site region 66426	1150 bp downstream
Tssr66427	transcription start site region 66427	782 bp downstream
Tssr66428	transcription start site region 66428	756 bp downstream
Tssr66429	transcription start site region 66429	715 bp downstream
Tssr66430	transcription start site region 66430	684 bp downstream
Tssr72230	transcription start site region 72230	1433 bp upstream
Tssr72231	transcription start site region 72231	1408 bp upstream
Tssr72232	transcription start site region 72232	1164 bp upstream
Tssr72233	transcription start site region 72233	482 bp upstream
Tssr72234	transcription start site region 72234	124 bp upstream