rs49712545 SNP Detail

Summary

• ID
  rs49712545
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60630888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCCTTG AAACCTCTAA
  GCCCACCCCA ACACTTCTCC ATCAAAGCCA CACCTCCTAA TCCTCCTAAT CCTATTAAAG
  AGTTTCACTC CCAGCTTCGA ATACCTTTAC ATATTTTTAT GATAAAAGTA CAAATAACCG
  AAAAGAAGCA TCATCAGAGC AGTAATAATC CCTGCCATAT TTCTGTAACT CTACGTCCCA
  S
  GGACTCGTAC GGTCTTCTAC CGCCAATGAG GACAGTCCAT TTCACATGAG AACCCCGATG
  GTTTGATAGG GTAAATGACC TTCCCGCAAG ACGAGGAAGC AGGATGTGAA TCCACAGTCC
  CTTTGATACA AAAACCTATG ATCTCAATGA CTATTTCGAT TTAAACCAGC AAACATGGGA
  TAAGAGCTGA CACAAAGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss63529573	NES17015456	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	G		G		C
ss324986545	CHEV_15_60590594	CHEVERUD	SCREENING_POP	f	SNP					C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs49712545					SNP	C	C	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63529573	NES17015456	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60630888 () rs orientation: forward

Symbol	Name	Function Class
Gm48947	predicted gene, 48947	1192 bp upstream
Rr303268	regulatory region 303268	713 bp proximal
Rr313850	regulatory region 313850	714 bp proximal