rs49712728 SNP Detail

Summary

• ID
  rs49712728
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79405638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AAAAAATGTT TAGGTATTCA CCCTACATGT AATTTGTTGC
  CTTCATGGCT TTTTAAAATG CTCCACCCCA TTATCAGAAG TCACCTTATA GAAAATAGAG
  C
  AATTTATTTC CTGGTTTTGA ACTCTTGGTG CAAAAGTCAC TATCATTAGA CTGGGCCTTT
  ACTGTTATGT TAGACAATGT CTTTTTCTAT GCTATTGTGG T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146049438	ENSMUSSNP5424597	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49712728					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79405638 () rs orientation: forward

Symbol	Name	Function Class
Gm65520	predicted gene, 65520	within coordinates
Rr392979	regulatory region 392979	1218 bp upstream
Rr531251	regulatory region 531251	1800 bp proximal