rs49714464 SNP Detail

Summary

• ID
  rs49714464
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75547635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCTAAGCC TGTACCTGCC CCACCCTTGG GTGGCAGCTG
  GGTTTCCCCT GGGAGAACCC TCCACCTCCT GAGGCTTCTC AACGGTGGAG GAGCTGCGGG
  G
  GGAGGGGGGG CGGGGGGGGA AGCCTAGCAG CTGGAGAGGA GGGAGTGGCT CCAGTTGAGG
  GAGGGCAGGC CACCCGCTTC TGGGGTGGGC ATCAAGTCC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss132438937	ENSMUSSNP3293664	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss323751162	CHEV_11_75470311	CHEVERUD	SCREENING_POP	f	SNP			G		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49714464					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75547635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3273	CpG island 3273	222 bp distal
Myo1c	myosin IC	within coordinates
Rr402734	regulatory region 402734	1933 bp downstream
Rr451247	regulatory region 451247	926 bp distal
Rr451248	regulatory region 451248	within coordinates
Tssr103026	transcription start site region 103026	1034 bp downstream
Tssr103027	transcription start site region 103027	953 bp downstream
Tssr103028	transcription start site region 103028	891 bp downstream
Tssr103029	transcription start site region 103029	872 bp downstream
Tssr103030	transcription start site region 103030	809 bp downstream
Tssr103031	transcription start site region 103031	772 bp downstream
Tssr103032	transcription start site region 103032	632 bp downstream