rs49714476 SNP Detail

Summary

• ID
  rs49714476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:21295678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGAACTG TAGTTATAGG
  AAATAAGATA AAATATAGGC CCCATTTGGT ATCAGTACAA TCAAAGCGAA CAAATACAGG
  ACCAAGGAGA CCTTGTTTAC TTGAGCTTCC AATAAAAACA AACAAACAAA CAAACAAATC
  CTTGCTTTAC TCAAGTCCAG CACAGAACAA GACTGCACTT CTCCAGGCTT TGTGTGCTCC
  R
  TGAACCAAGC ACTCGGAGGG AGGGATTATC ATCCGGTTTG GAGCTTTGAT TCCTGGGGCA
  GTTTTAGCAA TTTAGAGTTT GCACCCTCAC TTACAGAAAA ACATTGGTGT AAAATGAGCG
  TAGTGATTTA ACCTTAGAAT AAAAAATGTG TTGGGGACAA TGAGTGAGCT CTGAGATGTA
  CATCAGAGCG CTTGCAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52168198	NES15221833	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49714476					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52168198	NES15221833	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21295678 () rs orientation: forward

Symbol	Name	Function Class
1700021A07Rik	RIKEN cDNA 1700021A07 gene	within coordinates
Cpgi1360	CpG island 1360	237 bp distal
Rr214085	regulatory region 214085	1123 bp proximal
Rr224569	regulatory region 224569	277 bp distal
Rr368955	regulatory region 368955	387 bp downstream
Tssr92636	transcription start site region 92636	319 bp downstream
Tssr92637	transcription start site region 92637	298 bp downstream