rs49715360 SNP Detail

Summary

• ID
  rs49715360
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGTGACT TTAGACTTAA
  CTCTCCAGGA AAACACCTTA TGAACTTGTA ATTATTATTC TGGGACGGAG AAGGAAAAAT
  AAACGTAAAA TAACAAACTT CAAAGTTGAA AGCAAAGTTT TTTGTTTTGT TTTGTTTTGT
  TTTTTTCTTT TTTTTGTCTC TCAACAGACA TTAATGTCAT AAGACATTTT GGTTGTAAGT
  S
  CAAAAGTATT AGTGGCTCCT AATGTATAAA GAACAGGCAA ATTACTAATC TACAAGTCTA
  AACAAACAAA CAAAAATTGT TTCTAAGTTT CTTCCCCATG CATTCACAAG TGGTTATCGT
  TCAAAAACAA TAACTATAAT TAATTAGAAC CCAGTTAATA AAACCTAGTG ATCTTTTTCA
  AGCACTCCTT TATAAAAATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss60436761	NES15940858	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs49715360					SNP	G	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60436761	NES15940858	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	283 bp proximal
Rr397965	regulatory region 397965	570 bp upstream
Rr583746	regulatory region 583746	257 bp proximal
Rr583747	regulatory region 583747	554 bp proximal
Rr583748	regulatory region 583748	635 bp proximal
Rr583749	regulatory region 583749	828 bp proximal
Rr583750	regulatory region 583750	996 bp proximal
Sass6	SAS-6 centriolar assembly protein	789 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	766 bp upstream
Tssr35316	transcription start site region 35316	623 bp downstream
Tssr35317	transcription start site region 35317	655 bp downstream