rs49715555 SNP Detail

Summary

• ID
  rs49715555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:62142081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTCTCC CAAAACCCCC
  TCTGCACTTT TCCTTCTACC TTCCTAACTT GCCCTCTCAG GTCATTAATT TCTCAGAAAA
  CATTTCTCTC ACTTGCTTTT TTTCACATAA TGAAAGAAGC TACTTACTTT CAAATAAAGC
  AGAATGATTT TAGAGCAAGG GAATGGCTTT GCAGGCACCA TCAGCACAAG GACCATTGCC
  Y
  GAGGAGGAGA TGCCATCAAA CATTCCTCTG CAAATCACAT GATGAATGTG AGATGGCTTC
  TTTCCCTTCA CTTTTCAAAG CCAGCAAAGC TGAGGGGTAT TTTCTTATGA GTGCTTGCAA
  CTTGGGACAA GTAAGTTAGA CCAGAAGAAA CCGCTTTGTC CCCCGAGACA GTTGCACAAC
  AGTCACATTA TAAGGATTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60476141	NES16455401	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C		T	C	T
ss148233773	ENSMUSSNP1118366	ENSEMBL	ENSEMBL_Sanger	f	SNP									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49715555					SNP	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60476141	NES16455401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:62142081 () rs orientation: forward

Symbol	Name	Function Class
Rr318921	regulatory region 318921	1120 bp proximal