rs49715677 SNP Detail

Summary

• ID
  rs49715677
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101262171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGAAGA TCAGTGTTCT
  ACCACACACT TCCTCTTTCT CCACCTTGGG TGCACCCCAC CAGAGTACAG CCTGGTTCCT
  ACCCTCAGCC TCTACCCCTG GTTCCCAGTG TGAGACCTAC CTGACGCGAA ACTCCTCCAC
  CTTCTCTAAC ACCTGCAACA GGTTGGCCTC CAGCTGTCCC CGCTCTTGGC TCACTTTACG
  M
  AGCTCCTCCT GCAGCCGGCC CTGGAATGTC TCATAATGGT GGCTGAGGTC GAAGGTGGCT
  GATCCCTGGC CCTGCAGGAA GCTCCATCGG GTCTCCAGCA GTTGGTTGCG TTGCTCCAGA
  GCTTGGACCT GCAAGAGCAG GAGGGTACTG AGTAGGTCAT CGGGTGCCAC ACTGGGTTCC
  CTGGACAGGT TGGGGGACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63630179	NES17037588	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49715677					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63630179	NES17037588	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101262171 () rs orientation: forward

Symbol	Name	Function Class
Gm35853	predicted gene, 35853	within coordinates
Krt80	keratin 80	within coordinates
Rr306049	regulatory region 306049	1171 bp distal
Rr311441	regulatory region 311441	within coordinates
Tssr133285	transcription start site region 133285	472 bp upstream
Tssr136556	transcription start site region 136556	241 bp downstream
Tssr136557	transcription start site region 136557	282 bp downstream
Tssr136558	transcription start site region 136558	299 bp downstream