rs49716246 SNP Detail

Summary

• ID
  rs49716246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86347782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAA AGGCATTTGG GGAGGAAAGC
  R
  TGTGTTCAGC TTACACTTCT ATACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136756066	ENSMUSSNP7064218	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323056338	CHEV_9_86359336	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49716246					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86347782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	612 bp distal
Cpgi22102	CpG island 22102	1188 bp proximal
Dop1a	DOP1 leucine zipper like protein A	1412 bp upstream
Rr684095	regulatory region 684095	790 bp distal
Rr684096	regulatory region 684096	289 bp distal
Rr684097	regulatory region 684097	750 bp distal
Rr684098	regulatory region 684098	935 bp proximal
Rr684099	regulatory region 684099	1352 bp proximal
Rr684100	regulatory region 684100	1436 bp proximal
Tssr86391	transcription start site region 86391	1434 bp upstream
Tssr86392	transcription start site region 86392	1444 bp upstream
Tssr86393	transcription start site region 86393	1495 bp upstream
Tssr90780	transcription start site region 90780	786 bp upstream
Tssr90781	transcription start site region 90781	771 bp upstream
Ube3d	ubiquitin protein ligase E3D	779 bp upstream