rs49716305 SNP Detail

Summary

• ID
  rs49716305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34251193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCCGAAGTTG GACGTCTCGC TGTCCAGGAG ACTGAGCGGT
  CTGAGCAGGG AAAGTTTGGA GCTCCGCGTG ATTGGAAAGA ATGAAGGTGT GAGGATTCTG
  Y
  CAACTTTTTC CTTTCTCTGC GTGTGCTGGG ATCTTGTGGG GACTGCTTCA AGAGAACCCG
  CAGATGTGAG TTTCCCGACG ACTAACACTT ACTTCCCTCT T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134764184	ENSMUSSNP713430	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49716305					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34251193 () rs orientation: forward

Symbol	Name	Function Class
Rr575108	regulatory region 575108	106 bp distal
Rr575109	regulatory region 575109	within coordinates
Rr575110	regulatory region 575110	1253 bp proximal
Tssr28802	transcription start site region 28802	288 bp downstream
Tssr28803	transcription start site region 28803	254 bp downstream
Tssr28804	transcription start site region 28804	111 bp downstream