rs49716487 SNP Detail

Summary

• ID
  rs49716487
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94353982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTGGTG GTGCACGCCT
  TTAATCCCAG CACTTGGGAG ATAGAGGCAG GTGGGTTTCT GAGTTTGCGG CCAGCCTGGT
  TTACAGAGTG GGTTCCAGGA CAGCCAGGGC TATACAGAGA AACCCTGTCT CGAAAAAAAA
  AAAGTTTCCT AGATAAGCTA TTAGGATTTT ACCTCAGTTT ATGCCTCCCA TGTCTTTATT
  S
  GTATATCAGG TAATTTAAAT GGTTAAACAT TACAGACAGA TCTTTCCCTC GTTGCCCAGT
  TTGAAGAGAA CTGAGTGATA AATCTCAGAT GTAGTATCTT TTCTTACTGA GTACTAGGTA
  ATCTCAGATG GTGGTGGGAC CTGCTCATTA GAAGCAATTA CTCATAGGCA TGGAGGGCCA
  TCAGGGTTTG ATCTTTTCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss60514791	NES16523634	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs49716487					SNP	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514791	NES16523634	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94353982 () rs orientation: forward

Symbol	Name	Function Class
Gm56630	predicted gene, 56630	within coordinates
Rr319889	regulatory region 319889	1419 bp proximal
Rr328341	regulatory region 328341	834 bp distal
Rr392165	regulatory region 392165	338 bp downstream
Tssr139557	transcription start site region 139557	899 bp downstream