rs49716630 SNP Detail

Summary

• ID
  rs49716630
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34352672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTAAAATC ATAGTCAGAC ACTGTAGCAC ATGTCTGTAA
  TTCTAGCACT TGGGAGGTAG AAGCAAGACG ATCTGAGGTG CATCTGAGGA CAGGCTGGGG
  T
  ATCTGAGGCC CTCTCTTAAA AATGAAATAA AAATTGAAGG GCCAATTACA GCAATGCACA
  CCTATAATAC TGGGGAACTA AGGTGGGAGG ATCAAGGTC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146937813	ENSMUSSNP1008975	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49716630					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34352672 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	1305 bp upstream
Cpgi9813	CpG island 9813	858 bp proximal
Rr370354	regulatory region 370354	1173 bp upstream
Rr535610	regulatory region 535610	875 bp proximal
Rr535611	regulatory region 535611	1298 bp proximal
Rr535612	regulatory region 535612	1376 bp proximal
Rr535613	regulatory region 535613	1729 bp proximal
Tssr150444	transcription start site region 150444	1271 bp upstream
Tssr150445	transcription start site region 150445	1335 bp upstream
Tssr150446	transcription start site region 150446	1359 bp upstream
Tssr150447	transcription start site region 150447	1489 bp upstream