rs49716821 SNP Detail

Summary

• ID
  rs49716821
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164381477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAAGAGCCT TACAAGGGAG TGAGATCTTT GGGTGGGATA
  GGTTTGGTGA ATTTGAGGCT TGGTCTCTAT AACTGGTCTT TTGACACACA CAGCACTCAT
  W
  ATCCCTTCTG GACAGGCATG GAACAAATTC AGTGTCAGAA GGACCCCGTG GGTGTATGTG
  CGCATACATG TGTGCTCCTG TGTACAAGCC TGTATGTGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145981147	ENSMUSSNP1314020	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49716821					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164381477 () rs orientation: forward

Symbol	Name	Function Class
Gm70527	predicted gene, 70527	158 bp downstream
Rr372378	regulatory region 372378	291 bp downstream
Rr422241	regulatory region 422241	791 bp distal