rs49716993 SNP Detail

Summary

• ID
  rs49716993
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185044855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGGTTTC CAGAGGCTGG
  CTCTAAGCTA CCTTAGCGCG TAAGTCAACA GTGCTGGTGA CAACATACGT CTAAAATAAG
  GAAAGAAACG CCATCAACAG CTTCCTGTCT TCTCTAGGTG GCCAATGTTT CTAAATTTTA
  TCCATTTTAT GTTAAAAAAT ACTTGTTGCC AGGAAGTGGT GGTTCACGCC TTTAATCCCA
  K
  CACTTGGGAG GCAGAGGTAG GTGGATTTCT GAGTTTGAGA CCCGCCTGGT CTACAGAGTG
  AGTTCCAGGA CAGCCAGAGC TATACAGAGA AACCCTGTCT CCGAAAAAAA AAACAAAACA
  AAACTTGTTT TCATTAACCA GGGACTAGAT TGCCACCTAA ATTATACGGG GATTATATTA
  CAGATTCAGG AAATGGCCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146427385	ENSMUSSNP2387581	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320174684	CHEV_1_187136537	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49716993					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185044855 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	within coordinates
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	661 bp upstream
Mir215	microRNA 215	923 bp upstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	661 bp proximal
Rr425362	regulatory region 425362	1939 bp distal
Rr425363	regulatory region 425363	461 bp distal
Tssr10600	transcription start site region 10600	458 bp downstream
Tssr10601	transcription start site region 10601	1012 bp upstream