rs49717631 SNP Detail

Summary

• ID
  rs49717631
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84441191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT GGTGCTGTCT GAACAGCTAC
  W
  GTGTACTAAG ATGTAATAAT AAATA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145360630	ENSMUSSNP5860641	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss322745597	CHEV_8_86238461	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49717631					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84441191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20654	CpG island 20654	348 bp proximal
Ddx39a	DEAD box helicase 39a	615 bp upstream
Rr382392	regulatory region 382392	455 bp downstream
Rr401010	regulatory region 401010	412 bp upstream
Rr666291	regulatory region 666291	14 bp distal
Rr666292	regulatory region 666292	125 bp proximal
Rr666293	regulatory region 666293	997 bp proximal
Tssr78284	transcription start site region 78284	629 bp upstream
Tssr78285	transcription start site region 78285	665 bp upstream
Tssr78286	transcription start site region 78286	677 bp upstream
Tssr78287	transcription start site region 78287	743 bp upstream
Tssr78288	transcription start site region 78288	942 bp upstream