rs49717974 SNP Detail

Summary

• ID
  rs49717974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29965378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAAAGAGGTC CATCTGATAA AGTTGGACAG TGGTGGTGGC
  GCCCATCTTT AATCTTGGGA GGCAGAGGTG AACAGATCAC TGAATTCTAG GCCAACTTGG
  Y
  CTACAGAGCC ATTCCAGAAC AGCCAGAGCT ACACAGAGAA ACTGGGTTTC AGAAAAGGAA
  AAAAAAAATC CTTGTGAATG GTGGAATTAC AGACATACAC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146398040	ENSMUSSNP3802502	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49717974					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29965378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11424	CpG island 11424	1763 bp proximal
Rr554206	regulatory region 554206	340 bp distal
Rr554207	regulatory region 554207	952 bp proximal