rs49718481 SNP Detail

Summary

• ID
  rs49718481
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125198314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGTTGCGC TGCTGTGCGG
  CATGGGCCTC GCATCCGCAG CTGCCTGCCA CTCTTCCGTT AGTTCTCCCT GCAGCCGCTG
  TGCCCATCCA TTCTGCATTG CCTCCTGTCT TTCACTCCCT TTGCATGCTG TGTTTGTTGG
  AGCCGAGGAT AGGAGCTGCA CAGTCTGTCT CGGGGGCTTC TTCTAGTGTC ATGATAGGAT
  M
  CCGCATGGGA CAAAGCCAGG TGCCCGGCGG GTGGAGGGCA GGGTGGGAAG AGGAGGGCAA
  TGTTCTCAGA CCTCTATTCC TTCTGTGCTC TGGTCCACAA ACTGGAGGAG GCAGGGCCGT
  GCTAGGCCGG GGGTCCACTT CCCACGCAGC AGCCTTTCGT TCTGCAGAGC CATCGATCCT
  TCCTTTCCCT TGGCCCATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60940122	NES16188570	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49718481					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60940122	NES16188570	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125198314 () rs orientation: forward

Symbol	Name	Function Class
Rr133009	regulatory region 133009	1714 bp distal
Rr147527	regulatory region 147527	within coordinates
Rr368188	regulatory region 368188	836 bp upstream
Tssr58933	transcription start site region 58933	373 bp upstream
Tssr58934	transcription start site region 58934	474 bp upstream
Tssr58935	transcription start site region 58935	538 bp upstream
Vamp1	vesicle-associated membrane protein 1	within coordinates