rs49718679 SNP Detail

Summary

• ID
  rs49718679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127315855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAGAA GTGAGGGCCG
  GGCAGTGGAG GCGCACGCCT TTAATCCCAG CACTCGGGAG GCAGAGGCAG GTGGATTTCT
  GAGTTGGAGG CCAGCCTGGT CTACAGAGTG AGTTCCAGGA CAACCAGGGC CACACAGAGA
  AACCCTGTCT TGGAAAAAAG AAAACAAACA AACAAACAAA ACAGTGAGGT CCTCCTTTAC
  Y
  GTGGCATTTC CTGTTTAAAG GAGTCAGAAG AACATTGGCC CCCACTTCCT TCTCCTCACA
  CCCTCCCCAG CCCCACAGAG CATCTTTATT ATGTAACTCT GGCTGTCCTG AACTCCTGTA
  CAGACCAAAC TAGCCTCCAA CTCAGGCTGC CTCTGGCTCC CAAGTGCTGC AGTTAAGGTG
  TGTGCCACCA TTCCTGGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61334501	NES16949984	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49718679					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334501	NES16949984	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127315855 () rs orientation: forward

Symbol	Name	Function Class
R3hdm2	R3H domain containing 2	within coordinates
Rr213569	regulatory region 213569	255 bp distal
Rr213570	regulatory region 213570	1146 bp proximal
Rr218482	regulatory region 218482	746 bp proximal
Rr221959	regulatory region 221959	481 bp distal
Tssr96215	transcription start site region 96215	1661 bp upstream
Tssr96216	transcription start site region 96216	1704 bp upstream