rs49719787 SNP Detail

Summary

• ID
  rs49719787
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31350563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG ATGTTTGGAG GAAGTCAAAG
  M
  TGCGGCTCTG ACTCTTTTTA AAGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60562206	NES16490599	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	C	A	A	A	C	A	C		A	C	C	C		A
ss145456884	ENSMUSSNP3697291	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						C
ss325358790	CHEV_17_31268534	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49719787					SNP	C	C	A	A	C	A	A	A	C	A	C	C	A	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562206	NES16490599	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31350563 () rs orientation: forward

Symbol	Name	Function Class
Rr334776	regulatory region 334776	763 bp distal
Rr341222	regulatory region 341222	1564 bp distal
Rr341223	regulatory region 341223	1639 bp proximal
Tff3	trefoil factor 3, intestinal	1978 bp upstream
Tssr147270	transcription start site region 147270	1970 bp upstream