rs49720628 SNP Detail

Summary

• ID
  rs49720628
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134101818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGATGGGG GAACCTGACA GCACACAGTG GGGCTGCTGA
  ACCCAGGGGC CGAGAAGGCC TCTGAGGGTG ACCTTGACCT TAGGACTGGA AAGGAAGCAA
  A
  ATTGTTTGGG GTTTGCCTGC ACTGGGATGG AACCTTCCTA CTTCCCCAAG CTGGGTAACT
  GCTCCCCTAC TGAGCTGCCT CCTGGCTACA TTTTTGTTT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147527571	ENSMUSSNP543404	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321347244	CHEV_4_133930422	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49720628					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134101818 () rs orientation: forward

Symbol	Name	Function Class
Extl1	exostosin-like glycosyltransferase 1	1925 bp upstream
Rr601652	regulatory region 601652	1624 bp distal
Rr601653	regulatory region 601653	295 bp distal
Tssr43896	transcription start site region 43896	1946 bp upstream
Tssr43897	transcription start site region 43897	1918 bp upstream