rs49720634 SNP Detail

Summary

• ID
  rs49720634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35905159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACAAGGTA AGCGGCCAGG GGGTTTGCGG TGGGCATGGG
  CCGCTGGGCG GGCCCCCTGA ATAGGCTGCG GCCTGCACTT CCCGCGATCG CCTCCGCTGG
  R
  CTCGCGGCGT CTGGTTCCTT CTGCCGGCGC CGGCCCCAGG GGGGCGGCCT TCACACCCCG
  CTCCCAGAGA TGGCGCCCAG GAAGGCCCGT GCGCGGGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325583891	CHEV_18_35931760	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49720634					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35905159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	within coordinates
Gm16490	predicted gene 16490	1438 bp downstream
Rr393530	regulatory region 393530	within coordinates
Rr535947	regulatory region 535947	538 bp distal
Rr535948	regulatory region 535948	within coordinates
Tssr150551	transcription start site region 150551	738 bp downstream
Tssr150552	transcription start site region 150552	619 bp downstream
Tssr150553	transcription start site region 150553	548 bp downstream
Tssr150554	transcription start site region 150554	507 bp downstream
Tssr150555	transcription start site region 150555	491 bp downstream
Tssr150556	transcription start site region 150556	435 bp downstream
Tssr150557	transcription start site region 150557	396 bp downstream
Tssr150558	transcription start site region 150558	365 bp downstream
Tssr150559	transcription start site region 150559	152 bp downstream
Tssr150560	transcription start site region 150560	12 bp upstream
Tssr150561	transcription start site region 150561	39 bp upstream
Tssr150562	transcription start site region 150562	1695 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	within coordinates