rs49721359 SNP Detail

Summary

• ID
  rs49721359
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3674359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGGAGA ACATGCCAGC
  CAGAGCTACA TGAAACCCTG TCTCAAAAAC AATAAAGCAA AACACTCCCA AACAGAAGCC
  CTACTCTTCA TTGATTTATA GGGGTATGCA TTCATATGCC TTCCAGGAAA ACTGCCTGTT
  TTCTCCCTGT GGCCTCTCCC AAATATACAG ATGTTGGAGC AGGAACTGTA ATTTCCAGCC
  W
  TAGTTCTGCA CTAGCATGAG TCCTGCCACC TGACCTTAAG CCCATAGCAC TTTACGTGTT
  CATAGGGTCC TCTCCTTTCC TGCCTAGAGA CAGGTCATAG ATTTAGAGAG CTATGTGGAG
  TCTCACAGGT AATCTGGACA TCACCTACCT TGGGGCCGAT AGGTTGGAAG CCAGGCAGGG
  AATTAACTGT TACACGCTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61076609	NES16054575	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49721359					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076609	NES16054575	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3674359 () rs orientation: forward

Symbol	Name	Function Class
Pcp2	Purkinje cell protein 2 (L7)	within coordinates
Pet100	PET100 homolog	124 bp downstream
Rr658951	regulatory region 658951	1349 bp distal
Tssr80203	transcription start site region 80203	802 bp upstream
Tssr80204	transcription start site region 80204	210 bp downstream
Tssr80205	transcription start site region 80205	300 bp downstream
Tssr80206	transcription start site region 80206	562 bp downstream
Tssr80207	transcription start site region 80207	611 bp downstream
Tssr80208	transcription start site region 80208	630 bp downstream
Tssr80209	transcription start site region 80209	666 bp downstream
Tssr80210	transcription start site region 80210	847 bp downstream
Tssr80211	transcription start site region 80211	887 bp downstream
Tssr80212	transcription start site region 80212	915 bp downstream
Tssr80213	transcription start site region 80213	930 bp downstream
Tssr80214	transcription start site region 80214	1182 bp downstream
Tssr80215	transcription start site region 80215	1219 bp downstream