rs49721481 SNP Detail

Summary

• ID
  rs49721481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68257494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATTGTGA TTAGGCTAGT
  CTAGCTAACC AATTAATCCC TGGGTCTCCA ATGTTGGGAA TACTATTACA TATAACCAGG
  CCTGGCTTTT TCATGTGGAT CAGAGGACTG AGTCCACTCT GGTTTTTCAC TGTTGTGTAG
  CAATCACTTT AGTAACAGGG TCTTTTCTCT GGACTGATTT AAAATATGTA CTCAAATTTC
  Y
  CATTGAACCT CATAAACCCT CCGACATATA TGACAATTTT TATGCCCATT TAAAGGAAAA
  GAGGCTGATT TTGTTATGTG TCTATGTGTC TAATCTCTTA AACATAAAGA TTGATTACAT
  CTAATATGAA TTGACAGTGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGGAG AAATTCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146487426	ENSMUSSNP157597	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49721481					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68257494 () rs orientation: forward

Symbol	Name	Function Class
Rr376643	regulatory region 376643	1813 bp upstream