rs49722545 SNP Detail

Summary

• ID
  rs49722545
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70213021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTGTCTCA TCCCCGCCCC CTCTTTCTGC CCAGCCCCTC
  TCTCCTATTC CTTTCTCTGT CCCCTTTTCT CGCAGCCAGC CCACCTGCGC CTGCTATCAC
  K
  CCCGGATCAC CTTCTCAGTG GTTCTCTGGG ATCAGGCTTC CTCCCCTCCC CACAGTTCCC
  AGAACCCCTG CAGAGTCTCA GATCCCCGGT TCTCCGCGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132369460	ENSMUSSNP27456	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss323735023	CHEV_11_70135697	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49722545					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70213021 () rs orientation: forward

Symbol	Name	Function Class
Alox12e	arachidonate lipoxygenase, epidermal	within coordinates
Cpgi3180	CpG island 3180	within coordinates
Rr450275	regulatory region 450275	343 bp distal
Tssr108941	transcription start site region 108941	269 bp downstream
Tssr108942	transcription start site region 108942	307 bp downstream
Tssr108943	transcription start site region 108943	325 bp downstream